HL_9AX8_059

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_059 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.129

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9AX8|1|A|A|2471
9AX8|1|A|G|2472
9AX8|1|A|U|2473
9AX8|1|A|U|2474
9AX8|1|A|C|2475
9AX8|1|A|A|2476
9AX8|1|A|U|2477
9AX8|1|A|A|2478
9AX8|1|A|U|2479

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L6

Chain Y

50S ribosomal protein L36