HL_9AX8_082

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9AX8|1|a|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3287

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9AX8|1|a|G|462
9AX8|1|a|U|463
9AX8|1|a|U|464
9AX8|1|a|A|465
9AX8|1|a|A|466
9AX8|1|a|U|467
9AX8|1|a|A|468
9AX8|1|a|C|469
9AX8|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains