HL_9AX8_094

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AX8_094 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0854

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9AX8|1|a|U|1076
9AX8|1|a|G|1077
9AX8|1|a|U|1078
9AX8|1|a|G|1079
9AX8|1|a|A|1080
9AX8|1|a|A|1081

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain e

30S ribosomal protein S5