HL_9AX8_105
3D structure
- PDB id
- 9AX8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 9AX8|1|y|U|55, 9AX8|1|y|A|59, 9AX8|1|y|U|60
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AX8_105 not in the Motif Atlas
- Homologous match to HL_8WND_005
- Geometric discrepancy: 0.5116
- The information below is about HL_8WND_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9AX8|1|y|G|53
9AX8|1|y|U|54
9AX8|1|y|U|55
9AX8|1|y|C|56
9AX8|1|y|A|57
9AX8|1|y|A|58
9AX8|1|y|A|59
9AX8|1|y|U|60
9AX8|1|y|C|61
Current chains
- Chain y
- P-site tRNA-fMet M1
Nearby chains
- Chain 6
- 50S ribosomal protein L33
- Chain F
- 50S ribosomal protein L5
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