HL_9AZS_003
3D structure
- PDB id
- 9AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AZS_003 not in the Motif Atlas
- Homologous match to HL_1QTQ_003
- Geometric discrepancy: 0.3029
- The information below is about HL_1QTQ_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9AZS|1|AT|G|54
9AZS|1|AT|U|55
9AZS|1|AT|U|56
9AZS|1|AT|C|57
9AZS|1|AT|G|58
9AZS|1|AT|A|59
9AZS|1|AT|A|60
9AZS|1|AT|A|61
9AZS|1|AT|C|62
Current chains
- Chain AT
- A/T site tRNA
Nearby chains
- Chain CF
- Elongation factor 1-alpha 1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: