HL_9AZS_045

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZS_045 not in the Motif Atlas

Geometric match to HL_8XPP_001

Geometric discrepancy: 0.1627

The information below is about HL_8XPP_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9AZS|1|L5|C|2561
9AZS|1|L5|G|2562
9AZS|1|L5|C|2563
9AZS|1|L5|G|2564
9AZS|1|L5|A|2565
9AZS|1|L5|G|2566

Current chains

Chain L5

28S rRNA

Nearby chains