HL_9AZS_054

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGUCGGUCGCGGCCGGCGCCUAGC

Length

25 nucleotides

Bulged bases

9AZS|1|L5|G|2902, 9AZS|1|L5|G|2903, 9AZS|1|L5|G|2910, 9AZS|1|L5|G|3585, 9AZS|1|L5|U|3595, 9AZS|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZS|1|L5|G|2901
9AZS|1|L5|G|2902
9AZS|1|L5|G|2903
9AZS|1|L5|U|2904
9AZS|1|L5|C|2905
9AZS|1|L5|G|2906
9AZS|1|L5|G|2907
9AZS|1|L5|U|2908
9AZS|1|L5|C|2909
9AZS|1|L5|G|2910
9AZS|1|L5|C|3584
9AZS|1|L5|G|3585
9AZS|1|L5|G|3586
9AZS|1|L5|C|3587
9AZS|1|L5|C|3588
9AZS|1|L5|G|3589
9AZS|1|L5|G|3590
9AZS|1|L5|C|3591
9AZS|1|L5|G|3592
9AZS|1|L5|C|3593
9AZS|1|L5|C|3594
9AZS|1|L5|U|3595
9AZS|1|L5|A|3596
9AZS|1|L5|G|3597
9AZS|1|L5|C|3598

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11