HL_9B00_002
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGGUAGCGG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B00_002 not in the Motif Atlas
- Homologous match to HL_8VTW_002
- Geometric discrepancy: 0.077
- The information below is about HL_8VTW_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9B00|1|1A|C|87
9B00|1|1A|G|88
9B00|1|1A|G|89
9B00|1|1A|U|90
9B00|1|1A|A|92
9B00|1|1A|G|93
9B00|1|1A|C|94
9B00|1|1A|G|94|||A
9B00|1|1A|G|95
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 1X
- 50S ribosomal protein L23
- Chain 1Y
- 50S ribosomal protein L24
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