HL_9B00_049

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9B00|1|1A|A|2030, 9B00|1|1A|A|2031, 9B00|1|1A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B00_049 not in the Motif Atlas

Homologous match to HL_8VTW_049

Geometric discrepancy: 0.0753

The information below is about HL_8VTW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9B00|1|1A|G|2027
9B00|1|1A|U|2028
9B00|1|1A|G|2029
9B00|1|1A|A|2030
9B00|1|1A|A|2031
9B00|1|1A|G|2032
9B00|1|1A|A|2033
9B00|1|1A|U|2034
9B00|1|1A|G|2035
9B00|1|1A|C|2036

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1U

50S ribosomal protein L20