HL_9B00_058
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGUGUGGAAG
- Length
- 10 nucleotides
- Bulged bases
- 9B00|1|1A|U|2406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B00_058 not in the Motif Atlas
- Homologous match to HL_8VTW_058
- Geometric discrepancy: 0.0665
- The information below is about HL_8VTW_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14199.2
- Basepair signature
- cWW-tHS-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9B00|1|1A|C|2404
9B00|1|1A|G|2405
9B00|1|1A|U|2406
9B00|1|1A|G|2407
9B00|1|1A|U|2408
9B00|1|1A|G|2409
9B00|1|1A|G|2410
9B00|1|1A|A|2411
9B00|1|1A|A|2412
9B00|1|1A|G|2413
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1P
- 50S ribosomal protein L15
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