HL_9B00_110
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 9B00|1|1y|U|33, 9B00|1|1y|A|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B00_110 not in the Motif Atlas
- Homologous match to HL_2BTE_002
- Geometric discrepancy: 0.3246
- The information below is about HL_2BTE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9B00|1|1y|G|30
9B00|1|1y|A|31
9B00|1|1y|PSU|32
9B00|1|1y|U|33
9B00|1|1y|G|34
9B00|1|1y|A|35
9B00|1|1y|A|36
9B00|1|1y|MIA|37
9B00|1|1y|A|38
9B00|1|1y|PSU|39
9B00|1|1y|C|40
Current chains
- Chain 1y
- A-site and E-site Deacylated tRNAphe
Nearby chains
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1g
- 30S ribosomal protein S7
- Chain 1k
- 30S ribosomal protein S11
- Chain 1v
- MF-mRNA
- Chain 1x
- Transfer RNA; tRNA
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