HL_9B00_146

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9B00|1|2A|U|1396, 9B00|1|2A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B00_146 not in the Motif Atlas

Homologous match to HL_8VTW_035

Geometric discrepancy: 0.0761

The information below is about HL_8VTW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9B00|1|2A|G|1389
9B00|1|2A|U|1390
9B00|1|2A|U|1391
9B00|1|2A|A|1392
9B00|1|2A|A|1393
9B00|1|2A|U|1394
9B00|1|2A|A|1395
9B00|1|2A|U|1396
9B00|1|2A|U|1397
9B00|1|2A|C|1398

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2X

50S ribosomal protein L23