HL_9B00_159

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CG(PSU)AAC(5MU)A(PSU)AA(OMC)G

Length

13 nucleotides

Bulged bases

9B00|1|2A|A|1913, 9B00|1|2A|C|1914, 9B00|1|2A|A|1916

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B00_159 not in the Motif Atlas

Homologous match to HL_8VTW_047

Geometric discrepancy: 0.1483

The information below is about HL_8VTW_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B00|1|2A|C|1909
9B00|1|2A|G|1910
9B00|1|2A|PSU|1911
9B00|1|2A|A|1912
9B00|1|2A|A|1913
9B00|1|2A|C|1914
9B00|1|2A|5MU|1915
9B00|1|2A|A|1916
9B00|1|2A|PSU|1917
9B00|1|2A|A|1918
9B00|1|2A|A|1919
9B00|1|2A|OMC|1920
9B00|1|2A|G|1921

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA

Chain 2x

Transfer RNA; tRNA