HL_9B00_205

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B00_205 not in the Motif Atlas

Homologous match to HL_4LFB_023

Geometric discrepancy: 0.5956

The information below is about HL_4LFB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39005.1

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

275

Unit IDs

9B00|1|2a|C|1030
9B00|1|2a|G|1030|||A
9B00|1|2a|C|1030|||B
9B00|1|2a|G|1030|||C
9B00|1|2a|A|1030|||D
9B00|1|2a|G|1031

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains