HL_9B0F_051

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0F_051 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0687

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B0F|1|L5|A|3724
9B0F|1|L5|G|3725
9B0F|1|L5|A|3726
9B0F|1|L5|A|3727
9B0F|1|L5|A|3728
9B0F|1|L5|U|3729

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain Lz

60S ribosomal protein L10a