HL_9B0F_104

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0F_104 not in the Motif Atlas

Homologous match to HL_8P9A_214

Geometric discrepancy: 0.0809

The information below is about HL_8P9A_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B0F|1|S2|U|1178
9B0F|1|S2|G|1179
9B0F|1|S2|C|1180
9B0F|1|S2|A|1181
9B0F|1|S2|A|1182
9B0F|1|S2|A|1183

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a