HL_9B0G_039

3D structure

PDB id

9B0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0G_039 not in the Motif Atlas

Geometric match to HL_4Y1M_003

Geometric discrepancy: 0.1708

The information below is about HL_4Y1M_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B0G|1|L5|C|2561
9B0G|1|L5|G|2562
9B0G|1|L5|C|2563
9B0G|1|L5|G|2564
9B0G|1|L5|A|2565
9B0G|1|L5|G|2566

Current chains

Chain L5

28S rRNA

Nearby chains