HL_9B0H_022

3D structure

PDB id

9B0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

9B0H|1|L5|C|1481, 9B0H|1|L5|G|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0H_022 not in the Motif Atlas

Geometric match to HL_5SWD_005

Geometric discrepancy: 0.1265

The information below is about HL_5SWD_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9B0H|1|L5|C|1480
9B0H|1|L5|C|1481
9B0H|1|L5|G|1482
9B0H|1|L5|C|1483
9B0H|1|L5|G|1484

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Li

60S ribosomal protein L36