HL_9B0H_107

3D structure

PDB id

9B0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0H_107 not in the Motif Atlas

Homologous match to HL_8CRE_218

Geometric discrepancy: 0.0776

The information below is about HL_8CRE_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9B0H|1|S2|A|1353
9B0H|1|S2|G|1354
9B0H|1|S2|C|1355
9B0H|1|S2|G|1356
9B0H|1|S2|A|1357
9B0H|1|S2|U|1358

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SC

40S ribosomal protein S2