HL_9B0J_060

3D structure

PDB id

9B0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUC

Length

75 nucleotides

Bulged bases

9B0J|1|L5|G|3956, 9B0J|1|L5|G|3974, 9B0J|1|L5|C|3978, 9B0J|1|L5|C|3979, 9B0J|1|L5|G|3980, 9B0J|1|L5|G|3981, 9B0J|1|L5|C|3982, 9B0J|1|L5|G|3983, 9B0J|1|L5|C|3984, 9B0J|1|L5|C|3985, 9B0J|1|L5|G|4018, 9B0J|1|L5|G|4019, 9B0J|1|L5|U|4020, 9B0J|1|L5|C|4021, 9B0J|1|L5|C|4022, 9B0J|1|L5|G|4023, 9B0J|1|L5|C|4024, 9B0J|1|L5|C|4025, 9B0J|1|L5|G|4026, 9B0J|1|L5|G|4027, 9B0J|1|L5|C|4028, 9B0J|1|L5|C|4029, 9B0J|1|L5|C|4030, 9B0J|1|L5|U|4031, 9B0J|1|L5|G|4032, 9B0J|1|L5|C|4033, 9B0J|1|L5|G|4035, 9B0J|1|L5|C|4038, 9B0J|1|L5|G|4042, 9B0J|1|L5|G|4043, 9B0J|1|L5|U|4044, 9B0J|1|L5|A|4048, 9B0J|1|L5|C|4052, 9B0J|1|L5|A|4053, 9B0J|1|L5|C|4054, 9B0J|1|L5|U|4058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0J|1|L5|G|3953
9B0J|1|L5|A|3954
9B0J|1|L5|G|3955
9B0J|1|L5|G|3956
9B0J|1|L5|U|3957
9B0J|1|L5|G|3958
9B0J|1|L5|U|3959
9B0J|1|L5|A|3960
9B0J|1|L5|G|3961
9B0J|1|L5|A|3962
9B0J|1|L5|A|3963
9B0J|1|L5|U|3964
9B0J|1|L5|A|3965
9B0J|1|L5|A|3966
9B0J|1|L5|G|3967
9B0J|1|L5|U|3968
9B0J|1|L5|G|3969
9B0J|1|L5|G|3970
9B0J|1|L5|G|3971
9B0J|1|L5|A|3972
9B0J|1|L5|G|3973
9B0J|1|L5|G|3974
9B0J|1|L5|C|3975
9B0J|1|L5|C|3976
9B0J|1|L5|C|3977
9B0J|1|L5|C|3978
9B0J|1|L5|C|3979
9B0J|1|L5|G|3980
9B0J|1|L5|G|3981
9B0J|1|L5|C|3982
9B0J|1|L5|G|3983
9B0J|1|L5|C|3984
9B0J|1|L5|C|3985
9B0J|1|L5|G|4018
9B0J|1|L5|G|4019
9B0J|1|L5|U|4020
9B0J|1|L5|C|4021
9B0J|1|L5|C|4022
9B0J|1|L5|G|4023
9B0J|1|L5|C|4024
9B0J|1|L5|C|4025
9B0J|1|L5|G|4026
9B0J|1|L5|G|4027
9B0J|1|L5|C|4028
9B0J|1|L5|C|4029
9B0J|1|L5|C|4030
9B0J|1|L5|U|4031
9B0J|1|L5|G|4032
9B0J|1|L5|C|4033
9B0J|1|L5|G|4034
9B0J|1|L5|G|4035
9B0J|1|L5|G|4036
9B0J|1|L5|C|4037
9B0J|1|L5|C|4038
9B0J|1|L5|G|4039
9B0J|1|L5|C|4040
9B0J|1|L5|C|4041
9B0J|1|L5|G|4042
9B0J|1|L5|G|4043
9B0J|1|L5|U|4044
9B0J|1|L5|G|4045
9B0J|1|L5|A|4046
9B0J|1|L5|A|4047
9B0J|1|L5|A|4048
9B0J|1|L5|U|4049
9B0J|1|L5|A|4050
9B0J|1|L5|C|4051
9B0J|1|L5|C|4052
9B0J|1|L5|A|4053
9B0J|1|L5|C|4054
9B0J|1|L5|U|4055
9B0J|1|L5|A|4056
9B0J|1|L5|C|4057
9B0J|1|L5|U|4058
9B0J|1|L5|C|4059

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a