HL_9B0J_066
3D structure
- PDB id
- 9B0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating with CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0J_066 not in the Motif Atlas
- Homologous match to HL_8CRE_056
- Geometric discrepancy: 0.088
- The information below is about HL_8CRE_056
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9B0J|1|L5|C|4270
9B0J|1|L5|A|4271
9B0J|1|L5|G|4272
9B0J|1|L5|A|4273
9B0J|1|L5|A|4274
9B0J|1|L5|G|4275
9B0J|1|L5|G|4276
9B0J|1|L5|G|4277
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CE
- Coiled-coil domain-containing protein 124
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lo
- 60S ribosomal protein L36a
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