HL_9B0J_068

3D structure

PDB id

9B0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0J_068 not in the Motif Atlas

Homologous match to HL_8P9A_170

Geometric discrepancy: 0.0731

The information below is about HL_8P9A_170

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B0J|1|L5|U|4321
9B0J|1|L5|G|4322
9B0J|1|L5|A|4323
9B0J|1|L5|A|4324
9B0J|1|L5|A|4325
9B0J|1|L5|G|4326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a