HL_9B0N_059

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUC

Length

75 nucleotides

Bulged bases

9B0N|1|L5|U|3957, 9B0N|1|L5|G|3958, 9B0N|1|L5|U|3959, 9B0N|1|L5|G|3961, 9B0N|1|L5|A|3962, 9B0N|1|L5|G|3970, 9B0N|1|L5|C|3976, 9B0N|1|L5|C|3978, 9B0N|1|L5|C|3979, 9B0N|1|L5|G|3980, 9B0N|1|L5|G|3981, 9B0N|1|L5|C|3982, 9B0N|1|L5|G|3983, 9B0N|1|L5|C|3984, 9B0N|1|L5|C|3985, 9B0N|1|L5|G|4018, 9B0N|1|L5|G|4019, 9B0N|1|L5|U|4020, 9B0N|1|L5|C|4021, 9B0N|1|L5|C|4022, 9B0N|1|L5|G|4023, 9B0N|1|L5|C|4024, 9B0N|1|L5|C|4025, 9B0N|1|L5|G|4026, 9B0N|1|L5|G|4027, 9B0N|1|L5|C|4028, 9B0N|1|L5|C|4029, 9B0N|1|L5|C|4030, 9B0N|1|L5|U|4031, 9B0N|1|L5|G|4032, 9B0N|1|L5|C|4033, 9B0N|1|L5|G|4035, 9B0N|1|L5|G|4039, 9B0N|1|L5|G|4042, 9B0N|1|L5|G|4043, 9B0N|1|L5|U|4044, 9B0N|1|L5|A|4048, 9B0N|1|L5|U|4049, 9B0N|1|L5|C|4054, 9B0N|1|L5|C|4057, 9B0N|1|L5|U|4058

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0N|1|L5|G|3953
9B0N|1|L5|A|3954
9B0N|1|L5|G|3955
9B0N|1|L5|G|3956
9B0N|1|L5|U|3957
9B0N|1|L5|G|3958
9B0N|1|L5|U|3959
9B0N|1|L5|A|3960
9B0N|1|L5|G|3961
9B0N|1|L5|A|3962
9B0N|1|L5|A|3963
9B0N|1|L5|U|3964
9B0N|1|L5|A|3965
9B0N|1|L5|A|3966
9B0N|1|L5|G|3967
9B0N|1|L5|U|3968
9B0N|1|L5|G|3969
9B0N|1|L5|G|3970
9B0N|1|L5|G|3971
9B0N|1|L5|A|3972
9B0N|1|L5|G|3973
9B0N|1|L5|G|3974
9B0N|1|L5|C|3975
9B0N|1|L5|C|3976
9B0N|1|L5|C|3977
9B0N|1|L5|C|3978
9B0N|1|L5|C|3979
9B0N|1|L5|G|3980
9B0N|1|L5|G|3981
9B0N|1|L5|C|3982
9B0N|1|L5|G|3983
9B0N|1|L5|C|3984
9B0N|1|L5|C|3985
9B0N|1|L5|G|4018
9B0N|1|L5|G|4019
9B0N|1|L5|U|4020
9B0N|1|L5|C|4021
9B0N|1|L5|C|4022
9B0N|1|L5|G|4023
9B0N|1|L5|C|4024
9B0N|1|L5|C|4025
9B0N|1|L5|G|4026
9B0N|1|L5|G|4027
9B0N|1|L5|C|4028
9B0N|1|L5|C|4029
9B0N|1|L5|C|4030
9B0N|1|L5|U|4031
9B0N|1|L5|G|4032
9B0N|1|L5|C|4033
9B0N|1|L5|G|4034
9B0N|1|L5|G|4035
9B0N|1|L5|G|4036
9B0N|1|L5|C|4037
9B0N|1|L5|C|4038
9B0N|1|L5|G|4039
9B0N|1|L5|C|4040
9B0N|1|L5|C|4041
9B0N|1|L5|G|4042
9B0N|1|L5|G|4043
9B0N|1|L5|U|4044
9B0N|1|L5|G|4045
9B0N|1|L5|A|4046
9B0N|1|L5|A|4047
9B0N|1|L5|A|4048
9B0N|1|L5|U|4049
9B0N|1|L5|A|4050
9B0N|1|L5|C|4051
9B0N|1|L5|C|4052
9B0N|1|L5|A|4053
9B0N|1|L5|C|4054
9B0N|1|L5|U|4055
9B0N|1|L5|A|4056
9B0N|1|L5|C|4057
9B0N|1|L5|U|4058
9B0N|1|L5|C|4059

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lz

60S ribosomal protein L10a