HL_9B0N_062

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9B0N|1|L5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0N_062 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.1138

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9B0N|1|L5|C|4193
9B0N|1|L5|U|4194
9B0N|1|L5|G|4195
9B0N|1|L5|G|4196
9B0N|1|L5|G|4197
9B0N|1|L5|G|4198
9B0N|1|L5|C|4199
9B0N|1|L5|G|4200
9B0N|1|L5|G|4201

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29

Chain Pt

Transfer RNA; tRNA