HL_9B0N_079

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9B0N|1|L5|C|5023, 9B0N|1|L5|C|5024, 9B0N|1|L5|C|5025, 9B0N|1|L5|U|5026, 9B0N|1|L5|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0N_079 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3363

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9B0N|1|L5|C|5021
9B0N|1|L5|U|5022
9B0N|1|L5|C|5023
9B0N|1|L5|C|5024
9B0N|1|L5|C|5025
9B0N|1|L5|U|5026
9B0N|1|L5|C|5027
9B0N|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8