HL_9B0O_029

3D structure

PDB id

9B0O (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

9B0O|1|L5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0O_029 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.3543

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9B0O|1|L5|C|1816
9B0O|1|L5|U|1817
9B0O|1|L5|G|1818
9B0O|1|L5|G|1819
9B0O|1|L5|C|1820
9B0O|1|L5|G|1821
9B0O|1|L5|U|1822
9B0O|1|L5|G|1823

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29