HL_9B0O_041

3D structure

PDB id

9B0O (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0O_041 not in the Motif Atlas

Geometric match to HL_8CRE_222

Geometric discrepancy: 0.1364

The information below is about HL_8CRE_222

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B0O|1|L5|C|2561
9B0O|1|L5|G|2562
9B0O|1|L5|C|2563
9B0O|1|L5|G|2564
9B0O|1|L5|A|2565
9B0O|1|L5|G|2566

Current chains

Chain L5

28S rRNA

Nearby chains