HL_9B0O_059

3D structure

PDB id

9B0O (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUC

Length

75 nucleotides

Bulged bases

9B0O|1|L5|A|3962, 9B0O|1|L5|G|3969, 9B0O|1|L5|G|3970, 9B0O|1|L5|C|3978, 9B0O|1|L5|C|3979, 9B0O|1|L5|G|3980, 9B0O|1|L5|G|3981, 9B0O|1|L5|C|3982, 9B0O|1|L5|G|3983, 9B0O|1|L5|C|3984, 9B0O|1|L5|C|3985, 9B0O|1|L5|G|4018, 9B0O|1|L5|G|4019, 9B0O|1|L5|U|4020, 9B0O|1|L5|C|4021, 9B0O|1|L5|C|4022, 9B0O|1|L5|G|4023, 9B0O|1|L5|C|4024, 9B0O|1|L5|C|4025, 9B0O|1|L5|G|4026, 9B0O|1|L5|G|4027, 9B0O|1|L5|C|4028, 9B0O|1|L5|C|4029, 9B0O|1|L5|C|4030, 9B0O|1|L5|U|4031, 9B0O|1|L5|G|4032, 9B0O|1|L5|C|4033, 9B0O|1|L5|G|4035, 9B0O|1|L5|C|4038, 9B0O|1|L5|G|4039, 9B0O|1|L5|C|4041, 9B0O|1|L5|G|4042, 9B0O|1|L5|G|4043, 9B0O|1|L5|U|4044, 9B0O|1|L5|A|4048, 9B0O|1|L5|U|4049, 9B0O|1|L5|A|4053, 9B0O|1|L5|C|4054, 9B0O|1|L5|C|4057, 9B0O|1|L5|U|4058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0O|1|L5|G|3953
9B0O|1|L5|A|3954
9B0O|1|L5|G|3955
9B0O|1|L5|G|3956
9B0O|1|L5|U|3957
9B0O|1|L5|G|3958
9B0O|1|L5|U|3959
9B0O|1|L5|A|3960
9B0O|1|L5|G|3961
9B0O|1|L5|A|3962
9B0O|1|L5|A|3963
9B0O|1|L5|U|3964
9B0O|1|L5|A|3965
9B0O|1|L5|A|3966
9B0O|1|L5|G|3967
9B0O|1|L5|U|3968
9B0O|1|L5|G|3969
9B0O|1|L5|G|3970
9B0O|1|L5|G|3971
9B0O|1|L5|A|3972
9B0O|1|L5|G|3973
9B0O|1|L5|G|3974
9B0O|1|L5|C|3975
9B0O|1|L5|C|3976
9B0O|1|L5|C|3977
9B0O|1|L5|C|3978
9B0O|1|L5|C|3979
9B0O|1|L5|G|3980
9B0O|1|L5|G|3981
9B0O|1|L5|C|3982
9B0O|1|L5|G|3983
9B0O|1|L5|C|3984
9B0O|1|L5|C|3985
9B0O|1|L5|G|4018
9B0O|1|L5|G|4019
9B0O|1|L5|U|4020
9B0O|1|L5|C|4021
9B0O|1|L5|C|4022
9B0O|1|L5|G|4023
9B0O|1|L5|C|4024
9B0O|1|L5|C|4025
9B0O|1|L5|G|4026
9B0O|1|L5|G|4027
9B0O|1|L5|C|4028
9B0O|1|L5|C|4029
9B0O|1|L5|C|4030
9B0O|1|L5|U|4031
9B0O|1|L5|G|4032
9B0O|1|L5|C|4033
9B0O|1|L5|G|4034
9B0O|1|L5|G|4035
9B0O|1|L5|G|4036
9B0O|1|L5|C|4037
9B0O|1|L5|C|4038
9B0O|1|L5|G|4039
9B0O|1|L5|C|4040
9B0O|1|L5|C|4041
9B0O|1|L5|G|4042
9B0O|1|L5|G|4043
9B0O|1|L5|U|4044
9B0O|1|L5|G|4045
9B0O|1|L5|A|4046
9B0O|1|L5|A|4047
9B0O|1|L5|A|4048
9B0O|1|L5|U|4049
9B0O|1|L5|A|4050
9B0O|1|L5|C|4051
9B0O|1|L5|C|4052
9B0O|1|L5|A|4053
9B0O|1|L5|C|4054
9B0O|1|L5|U|4055
9B0O|1|L5|A|4056
9B0O|1|L5|C|4057
9B0O|1|L5|U|4058
9B0O|1|L5|C|4059

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a

Chain Zt

Transfer RNA; tRNA