HL_9B0O_125

3D structure

PDB id

9B0O (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-A/T-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

9B0O|1|Zt|C|16, 9B0O|1|Zt|U|18, 9B0O|1|Zt|G|19, 9B0O|1|Zt|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0O_125 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.3139

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0O|1|Zt|C|13
9B0O|1|Zt|A|14
9B0O|1|Zt|G|15
9B0O|1|Zt|C|16
9B0O|1|Zt|U|18
9B0O|1|Zt|G|19
9B0O|1|Zt|U|20
9B0O|1|Zt|A|21
9B0O|1|Zt|G|22

Current chains

Chain Zt

Z site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA