HL_9B0P_015

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGACUGUCCCCAGUGC

Length

16 nucleotides

Bulged bases

9B0P|1|L5|G|1178, 9B0P|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0P|1|L5|G|1173
9B0P|1|L5|G|1174
9B0P|1|L5|A|1175
9B0P|1|L5|C|1176
9B0P|1|L5|U|1177
9B0P|1|L5|G|1178
9B0P|1|L5|U|1179
9B0P|1|L5|C|1180
9B0P|1|L5|C|1181
9B0P|1|L5|C|1182
9B0P|1|L5|C|1183
9B0P|1|L5|A|1184
9B0P|1|L5|G|1185
9B0P|1|L5|U|1186
9B0P|1|L5|G|1187
9B0P|1|L5|C|1188

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

Ribosomal protein uL16-like