HL_9B0P_043
3D structure
- PDB id
- 9B0P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class1 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGGUUCCGG
- Length
- 9 nucleotides
- Bulged bases
- 9B0P|1|L5|U|2707, 9B0P|1|L5|U|2708, 9B0P|1|L5|C|2709, 9B0P|1|L5|G|2711
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0P_043 not in the Motif Atlas
- Homologous match to HL_8CRE_038
- Geometric discrepancy: 0.482
- The information below is about HL_8CRE_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
9B0P|1|L5|C|2704
9B0P|1|L5|G|2705
9B0P|1|L5|G|2706
9B0P|1|L5|U|2707
9B0P|1|L5|U|2708
9B0P|1|L5|C|2709
9B0P|1|L5|C|2710
9B0P|1|L5|G|2711
9B0P|1|L5|G|2712
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain CA
- Proliferation-associated protein 2G4
- Chain LR
- 60S ribosomal protein L19
- Chain LU
- Heparin-binding protein HBp15
- Chain LX
- 60S ribosomal protein L23a
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