HL_9B0P_061

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_061 not in the Motif Atlas

Homologous match to HL_8CRE_056

Geometric discrepancy: 0.0938

The information below is about HL_8CRE_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9B0P|1|L5|C|4270
9B0P|1|L5|A|4271
9B0P|1|L5|G|4272
9B0P|1|L5|A|4273
9B0P|1|L5|A|4274
9B0P|1|L5|G|4275
9B0P|1|L5|G|4276
9B0P|1|L5|G|4277

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a