HL_9B0P_072

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

9B0P|1|L5|G|4910, 9B0P|1|L5|A|4911, 9B0P|1|L5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_072 not in the Motif Atlas

Geometric match to HL_8P9A_180

Geometric discrepancy: 0.1533

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9B0P|1|L5|G|4907
9B0P|1|L5|G|4908
9B0P|1|L5|A|4909
9B0P|1|L5|G|4910
9B0P|1|L5|A|4911
9B0P|1|L5|G|4912
9B0P|1|L5|G|4913
9B0P|1|L5|C|4914

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a