HL_9B0P_080

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

9B0P|1|L8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_080 not in the Motif Atlas

Homologous match to HL_8P9A_188

Geometric discrepancy: 0.1448

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

9B0P|1|L8|C|107
9B0P|1|L8|A|108
9B0P|1|L8|C|109
9B0P|1|L8|U|110
9B0P|1|L8|U|111
9B0P|1|L8|G|112

Current chains

Chain L8

5.8S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39