HL_9B0P_092

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

9B0P|1|S2|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_092 not in the Motif Atlas

Homologous match to HL_8CRE_202

Geometric discrepancy: 0.2441

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9B0P|1|S2|C|498
9B0P|1|S2|G|499
9B0P|1|S2|A|500
9B0P|1|S2|C|501
9B0P|1|S2|C|502
9B0P|1|S2|C|503
9B0P|1|S2|G|504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SY

40S ribosomal protein S24