HL_9B0W_029

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

9B0W|1|L5|C|1763, 9B0W|1|L5|A|1765, 9B0W|1|L5|A|1766, 9B0W|1|L5|A|1767, 9B0W|1|L5|G|1769

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0W|1|L5|G|1759
9B0W|1|L5|G|1760
9B0W|1|L5|G|1761
9B0W|1|L5|C|1762
9B0W|1|L5|C|1763
9B0W|1|L5|G|1764
9B0W|1|L5|A|1765
9B0W|1|L5|A|1766
9B0W|1|L5|A|1767
9B0W|1|L5|C|1768
9B0W|1|L5|G|1769
9B0W|1|L5|A|1770
9B0W|1|L5|U|1771
9B0W|1|L5|C|1772
9B0W|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LJ

60S ribosomal protein L11

Chain SP

Small ribosomal subunit protein uS19