3D structure

PDB id
9B0W (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human eEF2-A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
CUGAACGCCUCUAAG
Length
15 nucleotides
Bulged bases
9B0W|1|L5|G|4694, 9B0W|1|L5|C|4698
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B0W_077 not in the Motif Atlas
Homologous match to HL_8CRE_066
Geometric discrepancy: 0.072
The information below is about HL_8CRE_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

9B0W|1|L5|C|4688
9B0W|1|L5|U|4689
9B0W|1|L5|G|4690
9B0W|1|L5|A|4691
9B0W|1|L5|A|4692
9B0W|1|L5|C|4693
9B0W|1|L5|G|4694
9B0W|1|L5|C|4695
9B0W|1|L5|C|4696
9B0W|1|L5|U|4697
9B0W|1|L5|C|4698
9B0W|1|L5|U|4699
9B0W|1|L5|A|4700
9B0W|1|L5|A|4701
9B0W|1|L5|G|4702

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LH
60S ribosomal protein L9
Chain LO
60S ribosomal protein L13a
Chain Lm
Large ribosomal subunit protein eL40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3462 s