HL_9B0W_077
3D structure
- PDB id
- 9B0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human eEF2-A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUGAACGCCUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9B0W|1|L5|G|4694, 9B0W|1|L5|C|4698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0W_077 not in the Motif Atlas
- Homologous match to HL_8CRE_066
- Geometric discrepancy: 0.072
- The information below is about HL_8CRE_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
9B0W|1|L5|C|4688
9B0W|1|L5|U|4689
9B0W|1|L5|G|4690
9B0W|1|L5|A|4691
9B0W|1|L5|A|4692
9B0W|1|L5|C|4693
9B0W|1|L5|G|4694
9B0W|1|L5|C|4695
9B0W|1|L5|C|4696
9B0W|1|L5|U|4697
9B0W|1|L5|C|4698
9B0W|1|L5|U|4699
9B0W|1|L5|A|4700
9B0W|1|L5|A|4701
9B0W|1|L5|G|4702
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L9
- Chain LO
- 60S ribosomal protein L13a
- Chain Lm
- Large ribosomal subunit protein eL40
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