HL_9B0W_120

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9B0W|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0W_120 not in the Motif Atlas

Homologous match to HL_8CRE_219

Geometric discrepancy: 0.1239

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9B0W|1|S2|G|1366
9B0W|1|S2|U|1367
9B0W|1|S2|U|1368
9B0W|1|S2|A|1369
9B0W|1|S2|A|1370
9B0W|1|S2|U|1371
9B0W|1|S2|U|1372
9B0W|1|S2|C|1373

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S17