3D structure

PDB id
9B0W (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human eEF2-A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
GGUCGGCCCACGGC
Length
14 nucleotides
Bulged bases
9B0W|1|S2|G|1760, 9B0W|1|S2|C|1762, 9B0W|1|S2|G|1763, 9B0W|1|S2|G|1764, 9B0W|1|S2|C|1765, 9B0W|1|S2|C|1766, 9B0W|1|S2|C|1767, 9B0W|1|S2|A|1768, 9B0W|1|S2|C|1769, 9B0W|1|S2|G|1770, 9B0W|1|S2|G|1771
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9B0W|1|S2|G|1759
9B0W|1|S2|G|1760
9B0W|1|S2|U|1761
9B0W|1|S2|C|1762
9B0W|1|S2|G|1763
9B0W|1|S2|G|1764
9B0W|1|S2|C|1765
9B0W|1|S2|C|1766
9B0W|1|S2|C|1767
9B0W|1|S2|A|1768
9B0W|1|S2|C|1769
9B0W|1|S2|G|1770
9B0W|1|S2|G|1771
9B0W|1|S2|C|1772

Current chains

Chain S2
18S rRNA

Nearby chains

No other chains within 10Å

Coloring options:

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