HL_9B4Z_009

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

9B4Z|1|AA|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_009 not in the Motif Atlas

Geometric match to HL_4LFB_009

Geometric discrepancy: 0.0868

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

9B4Z|1|AA|C|342
9B4Z|1|AA|U|343
9B4Z|1|AA|A|344
9B4Z|1|AA|C|345
9B4Z|1|AA|G|346
9B4Z|1|AA|G|347

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BK

50S ribosomal protein L14

Chain BP

50S ribosomal protein L19