HL_9B4Z_012

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9B4Z|1|AA|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_012 not in the Motif Atlas

Geometric match to HL_8B0X_011

Geometric discrepancy: 0.2029

The information below is about HL_8B0X_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9B4Z|1|AA|G|462
9B4Z|1|AA|U|463
9B4Z|1|AA|U|464
9B4Z|1|AA|A|465
9B4Z|1|AA|A|466
9B4Z|1|AA|U|467
9B4Z|1|AA|A|468
9B4Z|1|AA|C|469
9B4Z|1|AA|C|470

Current chains

Chain AA

16S ribosomal RNA

Nearby chains