HL_9B4Z_025

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9B4Z|1|AA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_025 not in the Motif Atlas

Geometric match to HL_8B0X_022

Geometric discrepancy: 0.0554

The information below is about HL_8B0X_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9B4Z|1|AA|G|1089
9B4Z|1|AA|U|1090
9B4Z|1|AA|U|1091
9B4Z|1|AA|A|1092
9B4Z|1|AA|A|1093
9B4Z|1|AA|G|1094
9B4Z|1|AA|U|1095
9B4Z|1|AA|C|1096

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AG

30S ribosomal protein S7