HL_9B4Z_033
3D structure
- PDB id
- 9B4Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCUCACAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B4Z_033 not in the Motif Atlas
- Geometric match to HL_6GSK_203
- Geometric discrepancy: 0.1347
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9B4Z|1|AW|C|31
9B4Z|1|AW|C|32
9B4Z|1|AW|U|33
9B4Z|1|AW|C|34
9B4Z|1|AW|A|35
9B4Z|1|AW|C|36
9B4Z|1|AW|A|37
9B4Z|1|AW|A|38
9B4Z|1|AW|G|39
Current chains
- Chain AW
- tRNA-Val
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AL
- 30S ribosomal protein S12
- Chain AV
- mRNA
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: