HL_9B4Z_048

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9B4Z|1|BA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_048 not in the Motif Atlas

Geometric match to HL_8B0X_041

Geometric discrepancy: 0.048

The information below is about HL_8B0X_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9B4Z|1|BA|C|305
9B4Z|1|BA|U|306
9B4Z|1|BA|G|307
9B4Z|1|BA|G|308
9B4Z|1|BA|A|309
9B4Z|1|BA|A|310
9B4Z|1|BA|A|311
9B4Z|1|BA|G|312

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L24