HL_9B4Z_054

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

9B4Z|1|BA|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_054 not in the Motif Atlas

Geometric match to HL_8B0X_047

Geometric discrepancy: 0.0568

The information below is about HL_8B0X_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9B4Z|1|BA|C|487
9B4Z|1|BA|G|488
9B4Z|1|BA|G|489
9B4Z|1|BA|C|490
9B4Z|1|BA|G|491
9B4Z|1|BA|A|492
9B4Z|1|BA|G|493

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22