HL_9B4Z_055

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9B4Z|1|BA|U|546, 9B4Z|1|BA|A|547, 9B4Z|1|BA|G|548, 9B4Z|1|BA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_055 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.1685

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9B4Z|1|BA|G|543
9B4Z|1|BA|C|544
9B4Z|1|BA|U|545
9B4Z|1|BA|U|546
9B4Z|1|BA|A|547
9B4Z|1|BA|G|548
9B4Z|1|BA|G|549
9B4Z|1|BA|C|550

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21