HL_9B4Z_094

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_094 not in the Motif Atlas

Geometric match to HL_8B0X_083

Geometric discrepancy: 0.0923

The information below is about HL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

9B4Z|1|BA|U|2324
9B4Z|1|BA|G|2325
9B4Z|1|BA|C|2326
9B4Z|1|BA|A|2327
9B4Z|1|BA|A|2328
9B4Z|1|BA|U|2329
9B4Z|1|BA|G|2330
9B4Z|1|BA|G|2331

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain BF

50S ribosomal protein L5

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27