HL_9B4Z_106

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9B4Z|1|BA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B4Z_106 not in the Motif Atlas

Geometric match to HL_8B0X_095

Geometric discrepancy: 0.0438

The information below is about HL_8B0X_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9B4Z|1|BA|G|2819
9B4Z|1|BA|A|2820
9B4Z|1|BA|A|2821
9B4Z|1|BA|G|2822
9B4Z|1|BA|A|2823
9B4Z|1|BA|C|2824
9B4Z|1|BA|G|2825
9B4Z|1|BA|A|2826
9B4Z|1|BA|C|2827

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17