HL_9B51_030

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B51_030 not in the Motif Atlas

Geometric match to HL_8B0X_026

Geometric discrepancy: 0.0784

The information below is about HL_8B0X_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9B51|1|AA|C|1314
9B51|1|AA|U|1315
9B51|1|AA|G|1316
9B51|1|AA|C|1317
9B51|1|AA|A|1318
9B51|1|AA|A|1319
9B51|1|AA|C|1320
9B51|1|AA|U|1321
9B51|1|AA|C|1322
9B51|1|AA|G|1323

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S ribosomal protein S13

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19