HL_9B51_038

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B51_038 not in the Motif Atlas

Geometric match to HL_7YSE_003

Geometric discrepancy: 0.1579

The information below is about HL_7YSE_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9B51|1|AX|G|54
9B51|1|AX|U|55
9B51|1|AX|U|56
9B51|1|AX|C|57
9B51|1|AX|A|58
9B51|1|AX|A|59
9B51|1|AX|A|60
9B51|1|AX|U|61
9B51|1|AX|C|62

Current chains

Chain AX

tRNA-fMet

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5

Chain BM

50S ribosomal protein L16